Table 2 Detailed information on the reported QTLs containing the 11 DEGs in bovine liver at three lactation stages
Gene name | Early vs. dry | Peak vs. dry | Peak vs. early | Position (bp) | Position (cM)a | Previously reported QTL | |||
|---|---|---|---|---|---|---|---|---|---|
Distance to QTL peak (cM) | CI and peak location (cM) | Trait | QTL ID | ||||||
APOC2 | + |  |  | 53,057,717–53,059,957 | Chr18:67.9 | 1.9 | 54.713–76.57 (peak:66) | PY | 2721 |
|  |  |  |  |  | 2.3 | 54.713–76.57 (peak:65.6) | MY | 1532 | |
ACADVL | + |  |  | 27,568,181–27,573,378 | Chr19:47.1 | 4.0 | 14.1–60.4 (peak:43.1) | FY | 10,443 |
PPP1R3B | – |  |  | 24,316,623–24,317,477 | Chr27:34.3 | 0.5 | 15.176–52.32 (peak:33.8) | FP | 2740 |
GALE | + |  |  | 129,706,509–129,711,871 | Chr2:121.9 | 1.9 | 115.437–130 (peak:120) | FY | 1515 |
PKLR | – |  |  | 15,396,974–15,408,994 | Chr3:25.7 | 0.7 | 22.61–27.41 (peak:25) | FY | 2655 |
|  |  |  |  |  | 0.7 | 22.61–27.41 (peak:25) | PP | 2656 | |
|  |  |  |  |  | 1.7 | 6–32 (peak:27.41) | PP | 3435 | |
ANGPTL4 | + | + |  | 18,236,482–18,243,588 | Chr7:20.6 | 2.8 | 16.75–39.33 (peak:17.8) | PP | 3534 |
|  |  |  |  |  | 4.7 | 16.75–39.33 (peak:15.9) | PP | 3536 | |
CDKN1A | – |  | + | 10,551,755–10,568,782 | Chr23:14.1 | 0.9 | 11.82–20.66 (peak:15) | MY | 2590 |
|  |  |  |  |  | 1.0 | 13.77–28.30 (peak:15.1) | MY | 2568 | |
ODC1 | + | + |  | 87,175,389–87,182,661 | Chr11:95.0 | 0.1 | 92.17–97.57 (peak:94.9) | FY | 2669 |
LPIN1 |  | + | + | 86,050,742–86,128,538 | Chr11:93.8 | 1.1 | 92.17–97.57 (peak:94.9) | FY | 2669 |
DUSP1 |  | + |  | 4,449,106–4,452,189 | Chr20:5.5 | 2.7 | 0–31.86 (peak:8.238) | FY | 2564 |
|  |  |  |  |  | 4.6 | 0–20.165 (peak:10.08) | PY | 2750 | |
LMNA | + |  |  | 14,695,234–14,724,663 | Chr3:24.1 | 0.5 | 22.61–27.41 (peak:25) | FY | 2655 |
|  |  |  |  |  | 0.5 | 22.61–27.41 (peak:25) | PP | 2656 | |
|  |  |  |  |  | 2.9 | 6–32 (peak:27.41) | PP | 3435 | |